If someone goes through the trouble of giving you a detailed response to your question, then don’t simply state “Doesn't work”. This recent question on Bioinformatics is an example of pretty hardcore programming questions. Making statements based on opinion; back them up with references or personal experience. A subreddit dedicated to bioinformatics, computational genomics and systems biology. There are five key elements that make up a good question. I’m always interested in new ideas. Bioinformatics programming skills are becoming a necessity across many facets of biology and medicine, owed in part to the continuing explosion of biological data aggregation and the complexity and scale of questions now being addressed through modern bioinformatics. Wouldn't they just need to take all the lines that have the actual NT and then just implement a counter with a given length of NT? Thanks I have seen that subreddit before, I was interested to know some questions specific to bioinformatics positions. When you're soliciting help from a stranger, you need to have a little skin in the game, and this type of question will make it abundantly clear that you haven't put any effort into finding a solution on your own. Take a tour to get the hang of how Rosalind works. On the other hand, a good question will be straight to the point and contain all of the information necessary for someone else to quickly answer the question. Are you interested in learning how to program (in Python) within a scientific setting? I like sports. Are you getting a new error message? Fourth, make sure you proofread your post. However, there is a key point to keep in mind before you ask your question: don't be lazy. Offered by University of California San Diego. You and I have 3 billion things in common. Time is important to most people, and bad questions waste OP’s time and potential respondents' time. But avoid … Asking for help, clarification, or responding to other answers. Note that Python has become the most popular language in a general context, so it's natural that it's the most popular in bioinformatics … It’s useful. I have been reading articles here and there but would like to do some hands on projects - just not sure where to start! If you ask a simple question that can easily be Googled, then you might never get a response or you might get a lot of. Bioinformatics projects can involve mountains of code, and one of our best defenses against bugs is to write code for humans, not for computers (a point made in the excellent article from Wilson et al., 2012). For a collection of exercises to accompany Bioinformatics Algorithms book, go to the Textbook Track. There indeed seems to be at least a project towards developing rust libraries for bioinformatics: https://rust-bio.github.io/. However, there is a key point to keep in mind before you ask your question: don't be lazy. However, I would not recommend for beginners to learn Java due to many issues including memory management and that Python and R have many more bioinformaticians who build packages and answer questions online. If you're doing serious method development then C or C++ too. Hi, Can you guys share some programming questions which you have been asked to implement in interviews ? Please be sure to answer the question. Your title doesn't necessarily have to be in question tense as long as it gets the point across. The Honors Track allows you to implement the bioinformatics algorithms that you will encounter along the way in dozens of automatically graded coding challenges. So learn more about Bioinformatics with the help of this Bioinformatics Interview Questions with Answers guide . 6 min read. I find myself very stimulated by clinical research studies, i love anatomy and physiology. The primary goal of bioinformatics is to increase our understanding of biological processes. Since a majority of bioinformatics is computer work, short, self-contained, correct/compilable example (SSCCE), Get a bioinformatics education online for free. 250+ Bioinformatics Interview Questions and Answers, Question1: What is the science of bioinformatics? There's a discord channel from /r/learnprogramming you should join we talk nothing but programming. Make an updated SSCCE with the new code. If you have any further questions about bioinformatics or are interested in specific topics, feel free to reach out. An excerpt is given below. Provide details and share your research! Last win: Manas Mahale vs. “Solve the … In my opinion, the worst type of question is "How do I do xyz?" This is a very classic question: Which is your favorite programming language in bioinformatics? The Central Dogma . r/bioinformatics: ## A subreddit to discuss the intersection of computers and biology. Thanks for contributing an answer to Bioinformatics Stack Exchange! Read 134 answers by scientists with 335 recommendations from their colleagues to the question asked by Oluwaseyi Shorinola on Dec 14, 2012 It is the glue which … The one I am familiar with as it was used in my University is "Introduction to Bioinformatics" by Arthur Lesk (Oxford) 4th ed (2013). He first learned how to code when he came to EI in 2016 as a postdoctoral scientist in the Haerty Group. Take a tour to get the hang of how Rosalind works. Bioinformatics or coding language certification to put on resume? news for genome hackers. An example of a bad title would be "BAM file confusion”, which doesn't specify what the actual problem is, whereas "Trouble calculating average coverage for a BAM file" will make it clear what the issue is. Long, rambling questions like this will cause a lot of. What degree do I need for a career in bioinformatics? Next, ask yourself if your question is clear and straight to the point. User account menu. If you want someone to give you a serious answer, then you want to show that you are serious by using proper punctuation and grammar. ------ Question3: What kinds of metrics would you gauge to determine the financial, strategic … What about rust for "serious method development" ? Looks like you're using new Reddit on an old browser. During an interview for a bioinformatician position, I mentioned I wanted to learn Haskell and C to extend my programming abilities (I use almost exclusively bash and Python). 1. Is the output different now? Bioinformatics Stack Exchange is a question and answer site for researchers, developers, students, teachers, and end users interested in bioinformatics. Bioinformatics Interview Questions and Answers will guide us now that Bioinformatics is the application of information technology and computer science to the field of molecular biology. Let’s start with a question: “What made me (you) interested in Bioinformatics?”. On most sites, only the title of your question will be visible until someone clicks on it, so you better make it straight to the point. Bioinformatics Analyst is such a generic title unless you give quite a few more details about the positions you are applying for etc. Make sure you specify why it doesn’t work. What kind of coding questions would you ask a potential new hire entry level bioinformaticians? Ever see a painful-to-read question on a help site where the original poster (OP) asks a question, someone responds asking for more information, OP responds with not enough information, someone else responds asking for further clarification, and so on? Not many people have the time or patience to go through the effort of deciphering a bad question. Rosalind is a platform for learning bioinformatics and programming through problem solving. Bioinformatics resources for protein biology; Biological data analysis using InterMine (User Interface and API) COSMIC: Integrating and interpreting the world’s knowledge of somatic mutations in cancer; EMBL-EBI: An introduction to sequence searching; EMBL-EBI: Bioinformatics … Anybody can ask a question Anybody can answer The best answers are voted up and rise to the top Bioinformatics Beta. Press question mark to learn the rest of the keyboard shortcuts. Follow these to maximize your chances of receiving a response: First, a good question needs a good title that clearly and succinctly conveys the problem. This context might even get you recommendations for shortcuts or alternative approaches that you hadn't considered. Go to  indeed.com , and take a look at ... Bioinformatics is full of programming challenges, but did you know that there are people on the Internet right now who are willing to give you programming advice for free? By completing the Honors Track, you will be a bioinformatics software professional! • the human genome comprises ~ 25,000 protein-coding genes . Now that you’ve done your due diligence, you can ask your good question. The coding in bioinformatics is where the science is. Asking a good question makes it much easier for someone to respond since the problem will be clear and example code will be provided. ----- A subreddit dedicated to bioinformatics, computational … Press J to jump to the feed. There is just one catch: no one is going to help you if you waste their time. Before asking a stranger to devote time to your question, you need to devote some time yourself. Our hope is that others will leverage our work to answer further important questions about bioinformatics code. I am a Neonatal Intensive Care Registered Nurse. Question2: Does multidrug resistance (MDR) arise by activation of stable genes encoding drug efflux pumps or by mutations of genes encoding other types of transporters in bacterial pathogens? Apart from its narrow focus, the question is not about Biology per se, but how to use or adapt a script. Second, have a leading sentence or two about what you're trying to accomplish. Any advice is appreciated. what do you mean by most frequently occurring sequences if it's just one fastq file? This is from the same guy that made snakemake, by the way. Press question mark to learn the rest of the keyboard shortcuts. What is strange in your file is not so much that you have exons beyond the stop codon, but that you also have them marked as CDS (coding sequence). This topic has already been discussed on the Internet, but I think it would be nice to discuss it here. As a bioinformatics analyst, you just need to know about different software or tools, how to execute them via a pipeline or bash scripting, and how to filter your results, analyze them, and extract some useful information. Many UTRs are in exons. Use MathJax to format equations. I was wondering if someone could suggest an interesting coding project for a beginner bioinformatics student. Bioinformatics. Asking a good question makes it much easier for someone to respond since the problem will be clear and example code will be provided. Due diligence, you even have various cases of UTRs being multiple,! Be a bioinformatics software professional and bad questions waste OP ’ s time and potential respondents '.... 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